nf-core_modules/modules/gvcftools/extractvariants/meta.yml

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name: "gvcftools_extractvariants"
description: Removes all non-variant blocks from a gVCF file to produce a smaller variant-only VCF file.
keywords:
- gvcftools
- extract_variants
- extractvariants
- gvcf
- vcf
tools:
- "gvcftools":
description: "gvcftools is a package of small utilities for creating and analyzing gVCF files"
homepage: "{https://sites.google.com/site/gvcftools/home}"
documentation: "{https://sites.google.com/site/gvcftools/home/configuration-and-analysis}"
tool_dev_url: "{https://github.com/sequencing/gvcftools}"
doi: ""
licence: "['MIT']"
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- gvcf:
type: file
description: GVCF file
pattern: "*.{g.vcf,gvcf}.gz"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- vcf:
type: file
description: Converted variant-only VCF file
pattern: "*.vcf.gz"
authors:
- "@nvnieuwk"