mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
35 lines
1.1 KiB
YAML
35 lines
1.1 KiB
YAML
|
name: "msisensor2_scan"
|
||
|
|
description: msisensor2 detection of MSI regions.
|
||
|
|
keywords:
|
||
|
|
- msi
|
||
|
|
tools:
|
||
|
|
- "msisensor2":
|
||
|
|
description: "MSIsensor2 is a novel algorithm based machine learning, featuring a large upgrade in the microsatellite instability (MSI) detection for tumor only sequencing data, including Cell-Free DNA (cfDNA), Formalin-Fixed Paraffin-Embedded(FFPE) and other sample types. The original MSIsensor is specially designed for tumor/normal paired sequencing data."
|
||
|
|
homepage: "https://github.com/niu-lab/msisensor2"
|
||
|
|
documentation: "https://github.com/niu-lab/msisensor2/blob/master/README.md"
|
||
|
|
tool_dev_url: "https://github.com/niu-lab/msisensor2"
|
||
|
|
doi: ""
|
||
|
|
licence: "GPL-3.0"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Path to reference genome.
|
||
|
|
pattern: "*.fasta"
|
||
|
|
- output:
|
||
|
|
type: val
|
||
|
|
description: Name of output MSI scan to write.
|
||
|
|
|
||
|
|
output:
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- output:
|
||
|
|
type: file
|
||
|
|
description: Output scan of MSI regions in FASTA file.
|
||
|
|
pattern: "*"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@adamrtalbot"
|