nf-core_modules/modules/seqwish/induce/meta.yml

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name: seqwish_induce
description: Induce a variation graph in GFA format from alignments in PAF format
keywords:
- induce
- paf
- gfa
- graph
- variation graph
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tools:
- seqwish:
description: |
seqwish implements a lossless conversion from pairwise alignments between
sequences to a variation graph encoding the sequences and their alignments.
homepage: https://github.com/ekg/seqwish
documentation: https://github.com/ekg/seqwish
licence: ["MIT"]
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input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- paf:
type: list
description: comma-separated PAF file(s) of alignments, single entry allowed
pattern: "[*.{paf,paf.gz},*.{paf,paf.gz},...]"
- fasta:
type: file
description: FASTA file used to generate alignments
pattern: "*.{fa,fa.gz,fasta,fasta.gz}"
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output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- gfa:
type: file
description: Variation graph in GFA 1.0 format
pattern: "*.{gfa}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
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authors:
- "@heuermh"