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nf-core_modules/tests/modules/controlfreec/freec2circos/test.yml

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add freec2circos script (#1454) * add freec2circos script * remove todo statements
2022-03-26 20:25:29 +00:00
- name: controlfreec freec2circos test_controlfreec_freec2circos
command: nextflow run tests/modules/controlfreec/freec2circos -entry test_controlfreec_freec2circos -c tests/config/nextflow.config
tags:
- controlfreec
- controlfreec/freec2circos
files:
- path: output/controlfreec/test.circos.txt
md5sum: 19cf35f2c36b46f717dc8342b8a5a645
Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts (#1504) * Fix typo * Add stub runs for testing input without matched normals * Add missing -stub-run * remove empty file checksum tests and change workflow names * test controlfreec naming * fix output file names * fix output file names * fix output file names * fix conda and container path difference for R scripts * update tar version to work with conda * fix version number in docker * try to fix path to script, pretty sure it won't work * try new ways to set path with wildcard * try which * add which but with escape * remove comment
2022-04-08 09:43:40 +00:00
- name: controlfreec freec2circos test_controlfreec_freec2circos_single
command: nextflow run tests/modules/controlfreec/freec2circos -entry test_controlfreec_freec2circos_single -c tests/config/nextflow.config -stub-run
tags:
- controlfreec
- controlfreec/freec2circos
files:
- path: output/controlfreec/test.circos.txt
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