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nf-core_modules/tests/modules/diamond/blastx/test.yml

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Update diamond/blastx diamond/blastp to support all possible output formats
2022-04-29 08:26:17 +00:00
- name: diamond blastx test_diamond_blastx
Update DIAMOND module to output log file (#1879) * Update DIAMOND module to output log file * Updating DIAMOND module to output log file - with jfy133 suggestions Co-authored-by: Mahwash Jamy <mahwashjamy@n183-p186.eduroam.kth.se> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-07-14 14:18:28 +00:00
command: nextflow run ./tests/modules/diamond/blastx -entry test_diamond_blastx -c ./tests/config/nextflow.config -c ./tests/modules/diamond/blastx/nextflow.config
Diamond (#710) * Added diamond * minor tweaks & yml fix * Fixed spacing issues due to failing lint * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/makedb/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/makedb/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-23 08:13:04 +00:00
tags:
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
- diamond
- diamond/blastx
Diamond (#710) * Added diamond * minor tweaks & yml fix * Fixed spacing issues due to failing lint * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/makedb/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/makedb/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/modules/diamond/blastx/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/modules/diamond/blastp/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/diamond/blastp/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-23 08:13:04 +00:00
files:
Update DIAMOND module to output log file (#1879) * Update DIAMOND module to output log file * Updating DIAMOND module to output log file - with jfy133 suggestions Co-authored-by: Mahwash Jamy <mahwashjamy@n183-p186.eduroam.kth.se> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-07-14 14:18:28 +00:00
- path: output/diamond/proteome.fasta.dmnd
- path: output/diamond/test.diamond_blastx.log
contains: ["queries aligned"]
Update diamond/blastx diamond/blastp to support all possible output formats
2022-04-29 08:26:17 +00:00
- path: output/diamond/test.diamond_blastx.txt
- name: diamond blastx test_diamond_blastx_daa
Update DIAMOND module to output log file (#1879) * Update DIAMOND module to output log file * Updating DIAMOND module to output log file - with jfy133 suggestions Co-authored-by: Mahwash Jamy <mahwashjamy@n183-p186.eduroam.kth.se> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-07-14 14:18:28 +00:00
command: nextflow run ./tests/modules/diamond/blastx -entry test_diamond_blastx_daa -c ./tests/config/nextflow.config -c ./tests/modules/diamond/blastx/nextflow.config
Update diamond/blastx diamond/blastp to support all possible output formats
2022-04-29 08:26:17 +00:00
tags:
- diamond
- diamond/blastx
files:
Update DIAMOND module to output log file (#1879) * Update DIAMOND module to output log file * Updating DIAMOND module to output log file - with jfy133 suggestions Co-authored-by: Mahwash Jamy <mahwashjamy@n183-p186.eduroam.kth.se> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-07-14 14:18:28 +00:00
- path: output/diamond/proteome.fasta.dmnd
Update diamond/blastx diamond/blastp to support all possible output formats
2022-04-29 08:26:17 +00:00
- path: output/diamond/test.diamond_blastx.daa
Update DIAMOND module to output log file (#1879) * Update DIAMOND module to output log file * Updating DIAMOND module to output log file - with jfy133 suggestions Co-authored-by: Mahwash Jamy <mahwashjamy@n183-p186.eduroam.kth.se> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-07-14 14:18:28 +00:00
- path: output/diamond/test.diamond_blastx.log
contains: ["queries aligned"]
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