nf-core_modules/tests/modules/dragmap/align/test.yml

- name: dragmap align single-end
  command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_single_end -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config
  tags:
    - dragmap
    - dragmap/align
  files:
    - path: output/dragmap/test.bam
    - path: output/dragmap/test.dragmap.log

- name: dragmap align single-end_sort
  command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_single_end_sort -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config
  tags:
    - dragmap
    - dragmap/align
  files:
    - path: output/dragmap/test.bam
    - path: output/dragmap/test.dragmap.log

- name: dragmap align paired-end
  command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config
  tags:
    - dragmap
    - dragmap/align
  files:
    - path: output/dragmap/test.bam
    - path: output/dragmap/test.dragmap.log

- name: dragmap align paired-end_sort
  command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_paired_end_sort -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config
  tags:
    - dragmap
    - dragmap/align
  files:
    - path: output/dragmap/test.bam
    - path: output/dragmap/test.dragmap.log
Dragmap (#1108) * feat(dragmap): Add initial hastable module * feat(dragmap): Add initial align module * test(dragmap): Remove md5sum Forgot sam files have a header. Might pipe this through samtools. * build(dragmap): Add mulled container * chore(dragmap): Update prefix * feat(dragmap): Output a bam file * feat(dragmap): Add log files * Update modules/dragmap/align/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> 2021-12-06 08:56:41 +00:00			`- name: dragmap align single-end`
			`command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_single_end -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config`
			`tags:`
			`- dragmap`
			`- dragmap/align`
			`files:`
			`- path: output/dragmap/test.bam`
			`- path: output/dragmap/test.dragmap.log`

feat: update dragmap to follow new bwa/mem + bwamem2/mem logic (#1146) 2021-12-08 22:19:37 +00:00			`- name: dragmap align single-end_sort`
			`command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_single_end_sort -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config`
			`tags:`
			`- dragmap`
			`- dragmap/align`
			`files:`
			`- path: output/dragmap/test.bam`
			`- path: output/dragmap/test.dragmap.log`

Dragmap (#1108) * feat(dragmap): Add initial hastable module * feat(dragmap): Add initial align module * test(dragmap): Remove md5sum Forgot sam files have a header. Might pipe this through samtools. * build(dragmap): Add mulled container * chore(dragmap): Update prefix * feat(dragmap): Output a bam file * feat(dragmap): Add log files * Update modules/dragmap/align/meta.yml Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com> 2021-12-06 08:56:41 +00:00			`- name: dragmap align paired-end`
			`command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config`
			`tags:`
			`- dragmap`
			`- dragmap/align`
			`files:`
			`- path: output/dragmap/test.bam`
			`- path: output/dragmap/test.dragmap.log`
feat: update dragmap to follow new bwa/mem + bwamem2/mem logic (#1146) 2021-12-08 22:19:37 +00:00
			`- name: dragmap align paired-end_sort`
			`command: nextflow run ./tests/modules/dragmap/align -entry test_dragmap_align_paired_end_sort -c ./tests/config/nextflow.config -c ./tests/modules/dragmap/align/nextflow.config`
			`tags:`
			`- dragmap`
			`- dragmap/align`
			`files:`
			`- path: output/dragmap/test.bam`
			`- path: output/dragmap/test.dragmap.log`