2022-09-08 08:05:57 +00:00
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- name: epang test_epang
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command: nextflow run ./tests/modules/epang -entry test_epang -c ./tests/config/nextflow.config -c ./tests/modules/epang/nextflow.config
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tags:
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- epang
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files:
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- path: output/epang/test.epa_info.log
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contains:
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- "INFO 3 Sequences done"
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2022-09-09 07:54:03 +00:00
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- path: output/epang/test.epa_result.jplace.gz
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2022-09-08 08:05:57 +00:00
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contains:
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- '"placements":'
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- '"metadata": {"invocation": "epa-ng --model LG --threads 2 --query query.alnfaa.gz --ref-msa reference.alnfaa.gz --tree reference.newick "}'
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