nf-core_modules/tests/modules/gatk4/mergemutectstats/test.yml

- name: gatk4 mergemutectstats
  command: nextflow run ./tests/modules/gatk4/mergemutectstats -entry test_gatk4_mergemutectstats -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mergemutectstats/nextflow.config
  tags:
    - gatk4
    - gatk4/mergemutectstats
  files:
    - path: output/gatk4/test.vcf.gz.stats
      md5sum: 17d2091015d04cbd4a26b7a67dc659e6
    - path: output/gatk4/versions.yml
add mergemutectstats (#1314) * add mergemutectstats * correct md5sum * Update modules/gatk4/mergemutectstats/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> 2022-02-18 03:38:55 -05:00			`- name: gatk4 mergemutectstats`
			`command: nextflow run ./tests/modules/gatk4/mergemutectstats -entry test_gatk4_mergemutectstats -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/mergemutectstats/nextflow.config`
			`tags:`
			`- gatk4`
			`- gatk4/mergemutectstats`
			`files:`
			`- path: output/gatk4/test.vcf.gz.stats`
			`md5sum: 17d2091015d04cbd4a26b7a67dc659e6`
Improve syntax/logic coherence in all gatk4 plugins (#1459) * feat: code polishing * Apply suggestions from code review Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * code polishing * more code polishing * code polishing * tests for applybqsrspark * fix typo * no need to check md5sum for versions.yml * fix: use correct syntax * code polishing again * add tests for markduplicatesspark * simplify mergevcfs tests * add tests for baserecalibratorspark * fix: path to entry * code polishing * fix linting * simplify module * update meta.yml * fix pair mode * fix: MITO mode * more tests * fix command * bad copy paste * fix typos * fix tests * fix test * update meta.yml * correct versions.yml in all test.yml * code polishing * code polishing * more code polishing * fix args * add tmpdir for all Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> 2022-04-12 11:15:39 -04:00			`- path: output/gatk4/versions.yml`