mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
20 lines
786 B
Text
20 lines
786 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { HOMER_MAKETAGDIRECTORY } from '../../../../modules/homer/maketagdirectory/main.nf'
|
||
|
|
include { HOMER_FINDPEAKS } from '../../../../modules/homer/findpeaks/main.nf'
|
||
|
|
include { HOMER_POS2BED } from '../../../../modules/homer/pos2bed/main.nf'
|
||
|
|
|
||
|
|
workflow test_homer_pos2bed {
|
||
|
|
input = [[id:'test'],
|
||
|
|
[file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true),
|
||
|
|
file(params.test_data['sarscov2']['genome']['test2_bed'], checkIfExists: true)]]
|
||
|
|
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
||
|
|
|
||
|
|
HOMER_MAKETAGDIRECTORY (input, fasta)
|
||
|
|
HOMER_FINDPEAKS ( HOMER_MAKETAGDIRECTORY.out.tagdir )
|
||
|
|
|
||
|
|
HOMER_POS2BED ( HOMER_FINDPEAKS.out.txt )
|
||
|
|
}
|