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nf-core_modules/tests/modules/picard/collectwgsmetrics/test.yml

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add picard_collectwgsmetrics (#304) * Added new module picard/collectwgsmetrics. * Removed unused outputs from meta.yml * Added version.txt file back to meta.yml * Updated test.yml * Removed md5sum from test.yaml and added contain tests. * Update functions.nf Fixed missing newline formatting. * Update main.nf Fixed missing newline formatting. * style(picard): Remove trailing whitespace Co-authored-by: Kevin Menden <kevin.menden@t-online.de> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com>
2021-03-22 16:05:59 +00:00
- name: picard collectwgsmetrics test_picard_collectwgsmetrics
update test for wgsmetrics
2022-05-22 04:49:31 +00:00
command: nextflow run ./tests/modules/picard/collectwgsmetrics -entry test_picard_collectwgsmetrics -c ./tests/config/nextflow.config -c ./tests/modules/picard/collectwgsmetrics/nextflow.config
add picard_collectwgsmetrics (#304) * Added new module picard/collectwgsmetrics. * Removed unused outputs from meta.yml * Added version.txt file back to meta.yml * Updated test.yml * Removed md5sum from test.yaml and added contain tests. * Update functions.nf Fixed missing newline formatting. * Update main.nf Fixed missing newline formatting. * style(picard): Remove trailing whitespace Co-authored-by: Kevin Menden <kevin.menden@t-online.de> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com>
2021-03-22 16:05:59 +00:00
tags:
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 08:10:52 +00:00
- picard/collectwgsmetrics
add picard_collectwgsmetrics (#304) * Added new module picard/collectwgsmetrics. * Removed unused outputs from meta.yml * Added version.txt file back to meta.yml * Updated test.yml * Removed md5sum from test.yaml and added contain tests. * Update functions.nf Fixed missing newline formatting. * Update main.nf Fixed missing newline formatting. * style(picard): Remove trailing whitespace Co-authored-by: Kevin Menden <kevin.menden@t-online.de> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com>
2021-03-22 16:05:59 +00:00
- picard
files:
- path: output/picard/test.CollectWgsMetrics.coverage_metrics
add stub for picard/collectwgsmtrics (#1945) * add stub for picard/collectwgsmtrics * fix conda build needs to be >2.0 error and typo
2022-08-09 07:33:15 +00:00
- name: picard collectwgsmetrics test_picard_collectwgsmetrics stub
command: nextflow run ./tests/modules/picard/collectwgsmetrics -entry test_picard_collectwgsmetrics -c ./tests/config/nextflow.config -c ./tests/modules/picard/collectwgsmetrics/nextflow.config -stub-run
tags:
- picard/collectwgsmetrics
- picard
files:
- path: output/picard/test.CollectWgsMetrics.coverage_metrics
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