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54 lines
1.4 KiB
Text
54 lines
1.4 KiB
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SCRAMBLE_CLUSTERANALYSIS } from '../../../../modules/scramble/clusteranalysis/main.nf'
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include { SCRAMBLE_CLUSTERIDENTIFIER } from '../../../../modules/scramble/clusteridentifier/main.nf'
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workflow test_scramble_clusteranalysis {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['scramble']['bam'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['scramble']['bam_bai'], checkIfExists: true),
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[]
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]
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fasta = []
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mei_ref = []
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SCRAMBLE_CLUSTERIDENTIFIER(
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input,
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fasta
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)
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SCRAMBLE_CLUSTERANALYSIS (
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SCRAMBLE_CLUSTERIDENTIFIER.out.clusters,
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fasta,
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mei_ref
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)
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}
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workflow test_scramble_clusteranalysis_fasta {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['scramble']['cram'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['scramble']['cram_crai'], checkIfExists: true),
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[]
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]
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fasta = file(params.test_data['homo_sapiens']['scramble']['fasta'], checkIfExists: true)
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mei_ref = []
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SCRAMBLE_CLUSTERIDENTIFIER(
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input,
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fasta
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)
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SCRAMBLE_CLUSTERANALYSIS (
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SCRAMBLE_CLUSTERIDENTIFIER.out.clusters,
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fasta,
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mei_ref
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)
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}
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