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15 lines
519 B
Text
15 lines
519 B
Text
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params.species = "homo_sapiens"
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params.build = "GRCh38"
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process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: 'test_vcf2maf_no_vep:VCF2MAF' {
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ext.args = "--ncbi-build ${params.build} --species ${params.species} --inhibit-vep"
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container = "quay.io/biocontainers/vcf2maf:1.6.21--hdfd78af_0"
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}
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withName: 'test_vcf2maf_vep:VCF2MAF' {
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ext.args = "--ncbi-build ${params.build} --species ${params.species}"
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}
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}
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