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18 lines
686 B
Text
18 lines
686 B
Text
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# Dockerfile to create container with bcl2fastq
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# Push to nfcore/bcl2fastq:<VER>
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FROM debian:bullseye-slim
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LABEL authors="Matthias De Smet <matthias.desmet@ugent.be>" \
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description="Docker image containing bcl2fastq"
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# Disclaimer: this container is not provided nor supported by Illumina
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# 'ps' command is needed by some nextflow executions to collect system stats
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# Install procps and clean apt cache
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RUN apt-get update \
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&& apt-get install -y \
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procps \
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&& apt-get clean -y && rm -rf /var/lib/apt/lists/*
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# Link hostname cmd to fix hardcoded path
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RUN ln -s /bin/hostname /usr/bin/hostname
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COPY bcl2fastq /usr/local/bin/bcl2fastq
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RUN chmod +x /usr/local/bin/bcl2fastq
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