mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
34 lines
931 B
Text
34 lines
931 B
Text
|
process LEGSTA {
|
||
|
|
tag "$meta.id"
|
||
|
|
label 'process_medium'
|
||
|
|
|
||
|
|
conda (params.enable_conda ? "bioconda::legsta=0.5.1" : null)
|
||
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
||
|
|
'https://depot.galaxyproject.org/singularity/legsta%3A0.5.1--hdfd78af_2':
|
||
|
|
'quay.io/biocontainers/legsta:0.5.1--hdfd78af_2' }"
|
||
|
|
|
||
|
|
input:
|
||
|
|
tuple val(meta), path(seqs)
|
||
|
|
|
||
|
|
output:
|
||
|
|
tuple val(meta), path("*.tsv"), emit: tsv
|
||
|
|
path "versions.yml" , emit: versions
|
||
|
|
|
||
|
|
when:
|
||
|
|
task.ext.when == null || task.ext.when
|
||
|
|
|
||
|
|
script:
|
||
|
|
def args = task.ext.args ?: ''
|
||
|
|
def prefix = task.ext.prefix ?: "${meta.id}"
|
||
|
|
"""
|
||
|
|
legsta \\
|
||
|
|
$args \\
|
||
|
|
$seqs > ${prefix}.tsv
|
||
|
|
|
||
|
|
cat <<-END_VERSIONS > versions.yml
|
||
|
|
"${task.process}":
|
||
|
|
legsta: \$(echo \$(legsta --version 2>&1) | sed 's/^.*legsta //; s/ .*\$//;')
|
||
|
|
END_VERSIONS
|
||
|
|
"""
|
||
|
|
}
|