nf-core_modules/tests/modules/freebayes/test.yml

- name: freebayes test_freebayes
  command: nextflow run tests/modules/freebayes -entry test_freebayes -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: f28d0b8e2ccedeac0e590ca2ecaac83d
    - path: output/freebayes/versions.yml
      md5sum: 53651eb835af65df829241257584a7d2

- name: freebayes test_freebayes_bed
  command: nextflow run tests/modules/freebayes -entry test_freebayes_bed -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: 1927441d1b7a4c48cbb61821de300ad4
    - path: output/freebayes/versions.yml
      md5sum: becc93c8a0be580c09d55b955d60a5e1

- name: freebayes test_freebayes_cram
  command: nextflow run tests/modules/freebayes -entry test_freebayes_cram -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: 9b8d1d51d779bbea4086c7f7a2ece641
    - path: output/freebayes/versions.yml
      md5sum: 2e5b266edfc6cab81353cfc72c00f67c

- name: freebayes test_freebayes_somatic
  command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: dcaa639912174055c1380913d6102c01
    - path: output/freebayes/versions.yml
      md5sum: 8fbdb4c052fb3e42b5508a966125fa05

- name: freebayes test_freebayes_somatic_cram_intervals
  command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic_cram_intervals -c tests/config/nextflow.config
  tags:
    - freebayes
  files:
    - path: output/freebayes/test.vcf.gz
      md5sum: b0052a2b83c0ba1b9686d0c96e61712f
    - path: output/freebayes/versions.yml
      md5sum: af97e3dfdc086188739907c3460e49e0
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00			`- name: freebayes test_freebayes`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`command: nextflow run tests/modules/freebayes -entry test_freebayes -c tests/config/nextflow.config`
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00			`tags:`
			`- freebayes`
			`files:`
			`- path: output/freebayes/test.vcf.gz`
Update intervals (#1278) * Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> 2022-02-10 09:34:22 +00:00			`md5sum: f28d0b8e2ccedeac0e590ca2ecaac83d`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`- path: output/freebayes/versions.yml`
			`md5sum: 53651eb835af65df829241257584a7d2`
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00
			`- name: freebayes test_freebayes_bed`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`command: nextflow run tests/modules/freebayes -entry test_freebayes_bed -c tests/config/nextflow.config`
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00			`tags:`
			`- freebayes`
			`files:`
			`- path: output/freebayes/test.vcf.gz`
Update intervals (#1278) * Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> 2022-02-10 09:34:22 +00:00			`md5sum: 1927441d1b7a4c48cbb61821de300ad4`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`- path: output/freebayes/versions.yml`
			`md5sum: becc93c8a0be580c09d55b955d60a5e1`
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00
			`- name: freebayes test_freebayes_cram`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`command: nextflow run tests/modules/freebayes -entry test_freebayes_cram -c tests/config/nextflow.config`
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00			`tags:`
			`- freebayes`
			`files:`
			`- path: output/freebayes/test.vcf.gz`
Update intervals (#1278) * Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> 2022-02-10 09:34:22 +00:00			`md5sum: 9b8d1d51d779bbea4086c7f7a2ece641`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`- path: output/freebayes/versions.yml`
			`md5sum: 2e5b266edfc6cab81353cfc72c00f67c`
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00
			`- name: freebayes test_freebayes_somatic`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic -c tests/config/nextflow.config`
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00			`tags:`
			`- freebayes`
			`files:`
			`- path: output/freebayes/test.vcf.gz`
Update intervals (#1278) * Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> 2022-02-10 09:34:22 +00:00			`md5sum: dcaa639912174055c1380913d6102c01`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`- path: output/freebayes/versions.yml`
			`md5sum: 8fbdb4c052fb3e42b5508a966125fa05`
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00
			`- name: freebayes test_freebayes_somatic_cram_intervals`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic_cram_intervals -c tests/config/nextflow.config`
Merge freebayes subtools (#1015) * feat: merge freebayes subtools * fix: typo * assess comments from review * fix: path to module 2021-11-03 10:22:06 +00:00			`tags:`
			`- freebayes`
			`files:`
			`- path: output/freebayes/test.vcf.gz`
Update intervals (#1278) * Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> 2022-02-10 09:34:22 +00:00			`md5sum: b0052a2b83c0ba1b9686d0c96e61712f`
Freebayes: compress with bgzip (#1243) * move to bgzip * update freebayes test results 2022-01-31 09:11:39 +00:00			`- path: output/freebayes/versions.yml`
			`md5sum: af97e3dfdc086188739907c3460e49e0`