mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
20 lines
615 B
Text
20 lines
615 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { VCFANNO } from '../../../modules/vcfanno/main.nf'
|
||
|
|
|
||
|
|
workflow test_vcfanno {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:false ], // meta map
|
||
|
|
file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
|
||
|
|
file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
|
||
|
|
toml = file("https://raw.githubusercontent.com/nf-core/test-datasets/8fbd9f99a2feb3f9e39cd3bcdc4a9176a5835673/data/delete_me/vcfanno.toml",
|
||
|
|
checkIfExists: true)
|
||
|
|
|
||
|
|
VCFANNO ( input, toml )
|
||
|
|
}
|