2021-02-12 12:24:10 +00:00
|
|
|
name: bwamem2_index
|
2021-02-12 12:00:02 +00:00
|
|
|
description: Create BWA-mem2 index for reference genome
|
|
|
|
|
keywords:
|
2022-02-15 11:15:27 +00:00
|
|
|
- index
|
|
|
|
|
- fasta
|
|
|
|
|
- genome
|
|
|
|
|
- reference
|
2021-02-12 12:00:02 +00:00
|
|
|
tools:
|
2022-02-15 11:15:27 +00:00
|
|
|
- bwa:
|
|
|
|
|
description: |
|
|
|
|
|
BWA-mem2 is a software package for mapping DNA sequences against
|
|
|
|
|
a large reference genome, such as the human genome.
|
|
|
|
|
homepage: https://github.com/bwa-mem2/bwa-mem2
|
|
|
|
|
documentation: https://github.com/bwa-mem2/bwa-mem2#usage
|
|
|
|
|
licence: ["MIT"]
|
2021-02-12 12:00:02 +00:00
|
|
|
input:
|
2022-02-15 11:15:27 +00:00
|
|
|
- fasta:
|
|
|
|
|
type: file
|
|
|
|
|
description: Input genome fasta file
|
2021-02-12 12:00:02 +00:00
|
|
|
output:
|
2022-02-15 11:15:27 +00:00
|
|
|
- index:
|
|
|
|
|
type: file
|
|
|
|
|
description: BWA genome index files
|
|
|
|
|
pattern: "*.{0132,amb,ann,bwt.2bit.64,pac}"
|
|
|
|
|
- versions:
|
|
|
|
|
type: file
|
|
|
|
|
description: File containing software versions
|
|
|
|
|
pattern: "versions.yml"
|
2021-02-12 12:00:02 +00:00
|
|
|
authors:
|
2022-02-15 11:15:27 +00:00
|
|
|
- "@maxulysse"
|
