mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
|
name: abricate_run
|
||
|
|
description: Screen assemblies for antimicrobial resistance against multiple databases
|
||
|
|
keywords:
|
||
|
|
- bacteria
|
||
|
|
- assembly
|
||
|
|
- antimicrobial reistance
|
||
|
|
tools:
|
||
|
|
- abricate:
|
||
|
|
description: Mass screening of contigs for antibiotic resistance genes
|
||
|
|
homepage: https://github.com/tseemann/abricate
|
||
|
|
documentation: https://github.com/tseemann/abricate
|
||
|
|
tool_dev_url: https://github.com/tseemann/abricate
|
||
|
|
doi: ""
|
||
|
|
licence: ['GPL v2', 'GPL v2']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- assembly:
|
||
|
|
type: file
|
||
|
|
description: FASTA, GenBank or EMBL formatted file
|
||
|
|
pattern: "*.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz,gbk,gbk.gz,embl,embl.gz}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- report:
|
||
|
|
type: file
|
||
|
|
description: Tab-delimited report of results
|
||
|
|
pattern: "*.{txt}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@rpetit3"
|