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19 lines
690 B
Text
19 lines
690 B
Text
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#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { ISMAPPER } from '../../../modules/ismapper/main.nf' addParams( options: [:] )
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workflow test_ismapper {
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input = [
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[ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ],
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file("https://github.com/jhawkey/IS_mapper/raw/master/test/inputs/S_suis_P17.gbk", checkIfExists: true),
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file("https://github.com/jhawkey/IS_mapper/raw/master/test/inputs/ISSsu3.fasta", checkIfExists: true)
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]
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ISMAPPER ( input )
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}
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