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nf-core_modules/tests/modules/raxmlng/test.yml

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Raxmlng (#443) * new raxml module * new raxml module * pass in args for bootstrap and add test for support file * remove unnecessary tag * ensure tags meet guidleines * Apply suggestions from code review * Update to latest functions file Co-authored-by: avantonder <avt@sanger.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-14 07:38:59 +00:00
- name: raxmlng no_bootstrap
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run ./tests/modules/raxmlng -entry test_raxmlng_no_bootstrap -c tests/config/nextflow.config
Raxmlng (#443) * new raxml module * new raxml module * pass in args for bootstrap and add test for support file * remove unnecessary tag * ensure tags meet guidleines * Apply suggestions from code review * Update to latest functions file Co-authored-by: avantonder <avt@sanger.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-14 07:38:59 +00:00
tags:
- raxmlng
files:
- path: output/raxmlng/output.raxml.bestTree
contains:
- 'sample1:0.359'
- 'sample2:1.50'
- 'sample3:0.000001'
- 'sample4:0.111'
- name: raxmlng bootstrap
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run ./tests/modules/raxmlng -entry test_raxmlng_bootstrap -c tests/config/nextflow.config
Raxmlng (#443) * new raxml module * new raxml module * pass in args for bootstrap and add test for support file * remove unnecessary tag * ensure tags meet guidleines * Apply suggestions from code review * Update to latest functions file Co-authored-by: avantonder <avt@sanger.ac.uk> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-14 07:38:59 +00:00
tags:
- raxmlng
files:
- path: output/raxmlng/output.raxml.bestTree
contains:
- 'sample1:0.359'
- 'sample2:1.50'
- 'sample3:0.000001'
- 'sample4:0.111'
- path: output/raxmlng/output.raxml.support
contains:
- 'sample1:0.359'
- 'sample2:1.50'
- 'sample3:0.000001'
- 'sample4:0.111'
contains_regex:
- '\)[89]\d:'
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