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49 lines
1.3 KiB
YAML
49 lines
1.3 KiB
YAML
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name: preseq_ccurve
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description: Software for predicting library complexity and genome coverage in high-throughput sequencing
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keywords:
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- preseq
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- library
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- complexity
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tools:
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- preseq:
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description: Software for predicting library complexity and genome coverage in high-throughput sequencing
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homepage: http://smithlabresearch.org/software/preseq/
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documentation: http://smithlabresearch.org/wp-content/uploads/manual.pdf
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tool_dev_url: https://github.com/smithlabcode/preseq
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doi: ""
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licence: ["GPL"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- ccurve:
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type: file
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description: File containing output of Preseq c curve
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pattern: "*.{c_curve.txt}"
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- log:
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type: file
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description: Log file containing stderr produced by Preseq
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pattern: "*.{log}"
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authors:
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- "@drpatelh"
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- "@Emiller88"
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