nf-core_modules/tests/software/fastqc/test.yml

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- name: Run fastqc single-end test workflow
command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_single_end -c tests/config/nextflow.config
tags:
- fastqc
files:
- path: output/test_single_end/test_fastqc.html
- path: output/test_single_end/test_fastqc.zip
- name: Run fastqc paired-end test workflow
command: nextflow run ./tests/software/fastqc/ -profile docker -entry test_paired_end -c tests/config/nextflow.config
tags:
- fastqc
files:
- path: output/test_paired_end/test_1_fastqc.html
- path: output/test_paired_end/test_2_fastqc.html
- path: output/test_paired_end/test_1_fastqc.zip
- path: output/test_paired_end/test_2_fastqc.zip