nf-core_modules/modules/deeptools/computematrix/meta.yml

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name: deeptools_computematrix
description: calculates scores per genome regions for other deeptools plotting utilities
keywords:
- genome
- regions
- scores
- matrix
tools:
- deeptools:
description: A set of user-friendly tools for normalization and visualization of deep-sequencing data
homepage:
documentation: https://deeptools.readthedocs.io/en/develop/index.html
tool_dev_url: https://github.com/deeptools/deepTools
doi: "10.1093/nar/gku365"
licence: ['GPL v3']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test' ]
- bigwig:
type: file
description: bigwig file containing genomic scores
pattern: "*.{bw,bigwig}"
- bed:
type: file
description: bed file containing genomic regions
pattern: "*.{bed}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- matrix:
type: file
description: |
gzipped matrix file needed by the plotHeatmap and plotProfile
deeptools utilities
pattern: "*.{computeMatrix.mat.gz}"
- table:
type: file
description: |
tabular file containing the scores of the generated matrix
pattern: "*.{computeMatrix.vals.mat.tab}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@jeremy1805"
- "@emiller88"
- "@drpatelh"
- "@joseespinosa"