nf-core_modules/modules/rsem/preparereference/meta.yml

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name: rsem_preparereference
description: Prepare a reference genome for RSEM
keywords:
- rsem
- reference
tools:
- rseqc:
description: |
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
homepage: https://github.com/deweylab/RSEM
documentation: https://github.com/deweylab/RSEM
doi: https://doi.org/10.1186/1471-2105-12-323
input:
- fasta:
type: file
description: The Fasta file of the reference genome
pattern: "*.{fasta,fa}"
- gtf:
type: file
description: The GTF file of the reference genome
pattern: "*.gtf"
output:
- rsem:
type: directory
description: RSEM index directory
pattern: "rsem"
- transcript_fasta:
type: file
description: Fasta file of transcripts
pattern: "rsem/*transcripts.fa"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@drpatelh"
- "@kevinmenden"