nf-core_modules/tests/modules/methyldackel/extract/test.yml

- name: Run methyldackel extract test workflow
  command: nextflow run ./tests/modules/methyldackel/extract -entry test_methyldackel_extract -c tests/config/nextflow.config
  tags:
    - methyldackel
    - methyldackel/extract
  files:
    - path: output/methyldackel/test.paired_end.methylated.sorted_CpG.bedGraph
      md5sum: abcc9d1db6e48d5aced567c337b563d4
add methyldackel/extract + tests + testdata 2021-02-17 18:18:55 +00:00			`- name: Run methyldackel extract test workflow`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run ./tests/modules/methyldackel/extract -entry test_methyldackel_extract -c tests/config/nextflow.config`
add methyldackel/extract + tests + testdata 2021-02-17 18:18:55 +00:00			`tags:`
			`- methyldackel`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- methyldackel/extract`
add methyldackel/extract + tests + testdata 2021-02-17 18:18:55 +00:00			`files:`
Fix 459 (#534) * Update test data names. Closes: #459 Thanks: @FriederikeHanssen (`samtools` tests are already fixed by another commit) * Fix file names in tests. The update of test data name required changes in the test yml files. I also updated the `bismark/summary/main.nf` file to get its data from the `params.test_data` map. 2021-06-14 11:24:59 +00:00			`- path: output/methyldackel/test.paired_end.methylated.sorted_CpG.bedGraph`
			`md5sum: abcc9d1db6e48d5aced567c337b563d4`