nf-core_modules/tests/modules/picard/collectwgsmetrics/test.yml

- name: picard collectwgsmetrics test_picard_collectwgsmetrics
  command: nextflow run tests/modules/picard/collectwgsmetrics -entry test_picard_collectwgsmetrics -c tests/config/nextflow.config
  tags:
    - picard/collectwgsmetrics
    - picard
  files:
    - path: output/picard/test.CollectWgsMetrics.coverage_metrics
      contains:
        - "GENOME_TERRITORY"
        - "29829"
        - "17554"
add picard_collectwgsmetrics (#304) * Added new module picard/collectwgsmetrics. * Removed unused outputs from meta.yml * Added version.txt file back to meta.yml * Updated test.yml * Removed md5sum from test.yaml and added contain tests. * Update functions.nf Fixed missing newline formatting. * Update main.nf Fixed missing newline formatting. * style(picard): Remove trailing whitespace Co-authored-by: Kevin Menden <kevin.menden@t-online.de> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> 2021-03-22 16:05:59 +00:00			`- name: picard collectwgsmetrics test_picard_collectwgsmetrics`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run tests/modules/picard/collectwgsmetrics -entry test_picard_collectwgsmetrics -c tests/config/nextflow.config`
add picard_collectwgsmetrics (#304) * Added new module picard/collectwgsmetrics. * Removed unused outputs from meta.yml * Added version.txt file back to meta.yml * Updated test.yml * Removed md5sum from test.yaml and added contain tests. * Update functions.nf Fixed missing newline formatting. * Update main.nf Fixed missing newline formatting. * style(picard): Remove trailing whitespace Co-authored-by: Kevin Menden <kevin.menden@t-online.de> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> 2021-03-22 16:05:59 +00:00			`tags:`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- picard/collectwgsmetrics`
add picard_collectwgsmetrics (#304) * Added new module picard/collectwgsmetrics. * Removed unused outputs from meta.yml * Added version.txt file back to meta.yml * Updated test.yml * Removed md5sum from test.yaml and added contain tests. * Update functions.nf Fixed missing newline formatting. * Update main.nf Fixed missing newline formatting. * style(picard): Remove trailing whitespace Co-authored-by: Kevin Menden <kevin.menden@t-online.de> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> 2021-03-22 16:05:59 +00:00			`- picard`
			`files:`
			`- path: output/picard/test.CollectWgsMetrics.coverage_metrics`
			`contains:`
			`- "GENOME_TERRITORY"`
			`- "29829"`
			`- "17554"`