nf-core_modules/tests/modules/samtools/fastq/test.yml

- name: samtools fastq test_samtools_fastq
  command: nextflow run tests/modules/samtools/fastq -entry test_samtools_fastq -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/fastq
  files:
    - path: output/samtools/test_2.fastq.gz
      md5sum: 229daf1a62d114cae42c65801e8c0114
    - path: output/samtools/test_1.fastq.gz
      md5sum: 4cab81f76e66361611621377f1b69d1d
new module: samtools/fastq (#316) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem 2021-03-23 07:13:07 -04:00			`- name: samtools fastq test_samtools_fastq`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 05:10:18 -04:00			`command: nextflow run tests/modules/samtools/fastq -entry test_samtools_fastq -c tests/config/nextflow.config`
new module: samtools/fastq (#316) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem 2021-03-23 07:13:07 -04:00			`tags:`
			`- samtools`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 04:10:52 -04:00			`- samtools/fastq`
new module: samtools/fastq (#316) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem 2021-03-23 07:13:07 -04:00			`files:`
modified the samtools/fastq module (#339) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem * Module samtools/fastq: * output compressed fastq.gz file(s) * add if conditionals for single/paired reads * samtools/fastq: modified test.yml * samtools/fastq: modified main.nf to avoid duplicated part of the script section Co-authored-by: suzannejin <suzanne.jin@crg.eu> 2021-03-23 13:43:52 -04:00			`- path: output/samtools/test_2.fastq.gz`
Update samtools modules with config logic (#381) * fixing paths for test * fixing paths for test * fixing pats to tests * fixing paths to tests * fixing paths to tests * fixing paths for tests * fixing paths for tests * fixing paths for tests * fixing paths fro tests * fixing paths for tests * indentation fixes * typo * renaming test results according to new file name * replacing the md5sums * fixing brackets * replacing md5sums * fixing md5sums * fixing md5sums' * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml Co-authored-by: Ramon Rivera <ramon.rivera10@upr.edu> Co-authored-by: Ramon Rivera <riveravicens@gmail.com> 2021-03-24 14:15:30 -04:00			`md5sum: 229daf1a62d114cae42c65801e8c0114`
modified the samtools/fastq module (#339) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem * Module samtools/fastq: * output compressed fastq.gz file(s) * add if conditionals for single/paired reads * samtools/fastq: modified test.yml * samtools/fastq: modified main.nf to avoid duplicated part of the script section Co-authored-by: suzannejin <suzanne.jin@crg.eu> 2021-03-23 13:43:52 -04:00			`- path: output/samtools/test_1.fastq.gz`
Update samtools modules with config logic (#381) * fixing paths for test * fixing paths for test * fixing pats to tests * fixing paths to tests * fixing paths to tests * fixing paths for tests * fixing paths for tests * fixing paths for tests * fixing paths fro tests * fixing paths for tests * indentation fixes * typo * renaming test results according to new file name * replacing the md5sums * fixing brackets * replacing md5sums * fixing md5sums * fixing md5sums' * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml * Update test.yml Co-authored-by: Ramon Rivera <ramon.rivera10@upr.edu> Co-authored-by: Ramon Rivera <riveravicens@gmail.com> 2021-03-24 14:15:30 -04:00			`md5sum: 4cab81f76e66361611621377f1b69d1d`