mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
44 lines
1.2 KiB
YAML
44 lines
1.2 KiB
YAML
|
name: bedtools_maskfasta
|
||
|
|
description: masks sequences in a FASTA file based on intervals defined in a feature file.
|
||
|
|
keywords:
|
||
|
|
- bed
|
||
|
|
- fasta
|
||
|
|
- maskfasta
|
||
|
|
tools:
|
||
|
|
- bedtools:
|
||
|
|
description: |
|
||
|
|
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
|
||
|
|
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- bed:
|
||
|
|
type: file
|
||
|
|
description: Bed feature file
|
||
|
|
pattern: "*.{bed}"
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Input fasta file
|
||
|
|
pattern: "*.{fa,fasta}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Output masked fasta file
|
||
|
|
pattern: "*.{fa}"
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
authors:
|
||
|
|
- "@joseespinosa"
|
||
|
|
- "@drpatelh"
|