mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
44 lines
1.3 KiB
YAML
44 lines
1.3 KiB
YAML
|
name: "genomescope2"
|
||
|
|
description: Estimate genome heterozygosity, repeat content, and size from sequencing reads using a kmer-based statistical approach
|
||
|
|
keywords:
|
||
|
|
- "genome size"
|
||
|
|
- "genome heterozygosity"
|
||
|
|
- "repeat content"
|
||
|
|
tools:
|
||
|
|
- "genomescope2":
|
||
|
|
description: "Reference-free profiling of polyploid genomes"
|
||
|
|
homepage: "http://qb.cshl.edu/genomescope/genomescope2.0/"
|
||
|
|
documentation: "https://github.com/tbenavi1/genomescope2.0/blob/master/README.md"
|
||
|
|
tool_dev_url: "https://github.com/tbenavi1/genomescope2.0"
|
||
|
|
doi: "https://doi.org/10.1038/s41467-020-14998-3"
|
||
|
|
licence: "['Apache License, Version 2.0 (Apache-2.0)']"
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- histogram:
|
||
|
|
type: file
|
||
|
|
description: A K-mer histogram file
|
||
|
|
pattern: "*.hist"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- linear_plot_png:
|
||
|
|
type: file
|
||
|
|
description: A genomescope2 linear plot in PNG format
|
||
|
|
pattern: "*.png"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@mahesh-panchal"
|