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65 lines
1.7 KiB
YAML
65 lines
1.7 KiB
YAML
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name: "gappa_examineheattree"
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description: colours a phylogeny with placement densities
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keywords:
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- phylogeny
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- phylogenetic placement
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- heattree
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- visualisation
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tools:
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- "gappa":
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description: "Genesis Applications for Phylogenetic Placement Analysis"
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homepage: "https://github.com/lczech/gappa"
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documentation: "https://github.com/lczech/gappa/wiki"
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tool_dev_url: "https://github.com/lczech/gappa"
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doi: "https://doi.org/10.1093/bioinformatics/btaa070"
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licence: "['GPL v3']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- jplace:
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type: file
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description: jplace file output from phylogenetic placement, e.g. EPA-NG, gzipped or not
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pattern: "*.{jplace,jplace.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- newick:
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type: file
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description: phylogenetic tree file in newick format
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pattern: "*.newick"
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- nexus:
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type: file
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description: coloured phylogenetic tree file in nexus format
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pattern: "*.nexus"
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- phyloxml:
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type: file
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description: coloured phylogenetic tree file in phyloxml format
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pattern: "*.phyloxml"
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- svg:
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type: file
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description: coloured phylogenetic tree file in svg format
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pattern: "*.svg"
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- colours:
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type: file
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description: colours used in plot
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pattern: "*.colours.txt"
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- log:
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type: file
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description: log file from the run
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pattern: "*.log"
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authors:
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- "@erikrikarddaniel"
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