nf-core_modules/modules/rasusa/meta.yml

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name: rasusa
description: Randomly subsample sequencing reads to a specified coverage
keywords:
- coverage
- depth
- subsampling
tools:
- rasusa:
description: Randomly subsample sequencing reads to a specified coverage
homepage: https://github.com/mbhall88/rasusa
documentation: https://github.com/mbhall88/rasusa/blob/master/README.md
tool_dev_url: https://github.com/mbhall88/rasusa
doi: "10.5281/zenodo.3731394"
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: List of input paired-end FastQ files
- genome_size:
type: string
description: Genome size of the species
- depth_cutoff:
type: integer
description: Depth of coverage cutoff
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- reads:
type: file
description: Reads with subsampled coverage
pattern: "*.fastq.gz"
authors:
- "@thanhleviet"