nf-core_modules/modules/md5sum/main.nf

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process MD5SUM {
tag "$meta.id"
label 'process_low'
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conda (params.enable_conda ? "conda-forge::coreutils=9.1" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
'ubuntu:20.04' }"
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input:
tuple val(meta), path(file)
output:
tuple val(meta), path("*.md5"), emit: checksum
path "versions.yml" , emit: versions
when:
task.ext.when == null || task.ext.when
script:
def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}"
"""
md5sum \\
$args \\
${file} \\
> ${file}.md5
cat <<-END_VERSIONS > versions.yml
"${task.process}":
md5sum: \$(echo \$(md5sum --version 2>&1 | head -n 1| sed 's/^.*) //;' ))
END_VERSIONS
"""
}