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25 lines
1 KiB
YAML
25 lines
1 KiB
YAML
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- name: Run stringtie forward strand test workflow
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command: nextflow run ./tests/software/stringtie/ -profile docker -entry test_stringtie_forward -c tests/config/nextflow.config
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tags:
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- stringtie
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files:
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- path: output/test_forward/test.ballgown
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- path: output/test_forward/test.gene_abundance.txt
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- path: output/test_forward/test.transcripts.gtf
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md5sum: f1b5baa8d94f86e499556a4ec419a75a
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- path: output/test_forward/test.coverage.gtf
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- name: Run stringtie reverse strand test workflow
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command: nextflow run ./tests/software/stringtie/ -profile docker -entry test_stringtie_reverse -c tests/config/nextflow.config
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tags:
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- stringtie
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files:
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- path: output/test_reverse/test.ballgown
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- path: output/test_reverse/test.gene_abundance.txt
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- path: output/test_reverse/test.transcripts.gtf
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md5sum: cb0367e5f98f19fcc2043d248deb513c
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- path: output/test_reverse/test.coverage.gtf
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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