nf-core_modules/tests/modules/genrich/test.yml

- name: genrich test_genrich
  command: nextflow run tests/modules/genrich -entry test_genrich -c tests/config/nextflow.config
  tags:
    - genrich
  files:
    - path: output/genrich/test.narrowPeak
      md5sum: 6afabdd3f691c7c84c66ff8a23984681

- name: genrich test_genrich_ctrl
  command: nextflow run tests/modules/genrich -entry test_genrich_ctrl -c tests/config/nextflow.config
  tags:
    - genrich
  files:
    - path: output/genrich/test.narrowPeak
      md5sum: 2fcc392360b317f5ebee88cdbc149e05

- name: genrich test_genrich_all_outputs
  command: nextflow run tests/modules/genrich -entry test_genrich_all_outputs -c tests/config/nextflow.config
  tags:
    - genrich
  files:
    - path: output/genrich/test.duplicates.txt
      md5sum: 159d557af7c23bc3cfb802d87fa96c34
    - path: output/genrich/test.intervals.bed
      md5sum: 4bea65caa3f4043d703af4b57161112e
    - path: output/genrich/test.narrowPeak
      md5sum: d41d8cd98f00b204e9800998ecf8427e
    - path: output/genrich/test.pileup.bedGraph
      md5sum: 03e53848de695b5794f32f15b2709203
    - path: output/genrich/test.pvalues.bedGraph
      md5sum: b14feef34b6d2379a173a734ca963cde

- name: genrich test_genrich_blacklist
  command: nextflow run tests/modules/genrich -entry test_genrich_blacklist -c tests/config/nextflow.config
  tags:
    - genrich
  files:
    - path: output/genrich/test.narrowPeak
      md5sum: 6afabdd3f691c7c84c66ff8a23984681

- name: genrich test_genrich_atacseq
  command: nextflow run tests/modules/genrich -entry test_genrich_atacseq -c tests/config/nextflow.config
  tags:
    - genrich
  files:
    - path: output/genrich/test.narrowPeak
      md5sum: ddea556b820f8be3695ffdf6c6f70aff
New module: genrich (#877) * Add genrich module * Rearrange genrich module from genrich/genrich to genrich * Remove copy/paste code * Fix meta.yml * Implement save_duplicates independently of -r opt 2021-10-22 10:22:02 +00:00			`- name: genrich test_genrich`
			`command: nextflow run tests/modules/genrich -entry test_genrich -c tests/config/nextflow.config`
			`tags:`
			`- genrich`
			`files:`
			`- path: output/genrich/test.narrowPeak`
			`md5sum: 6afabdd3f691c7c84c66ff8a23984681`

			`- name: genrich test_genrich_ctrl`
			`command: nextflow run tests/modules/genrich -entry test_genrich_ctrl -c tests/config/nextflow.config`
			`tags:`
			`- genrich`
			`files:`
			`- path: output/genrich/test.narrowPeak`
Refactor genrich to avoid params in main (#981) * Refactor genrich to avoid params in main * Missed to commit test.yml file 2021-10-29 14:37:39 +00:00			`md5sum: 2fcc392360b317f5ebee88cdbc149e05`
New module: genrich (#877) * Add genrich module * Rearrange genrich module from genrich/genrich to genrich * Remove copy/paste code * Fix meta.yml * Implement save_duplicates independently of -r opt 2021-10-22 10:22:02 +00:00
			`- name: genrich test_genrich_all_outputs`
			`command: nextflow run tests/modules/genrich -entry test_genrich_all_outputs -c tests/config/nextflow.config`
			`tags:`
			`- genrich`
			`files:`
			`- path: output/genrich/test.duplicates.txt`
Refactor genrich to avoid params in main (#981) * Refactor genrich to avoid params in main * Missed to commit test.yml file 2021-10-29 14:37:39 +00:00			`md5sum: 159d557af7c23bc3cfb802d87fa96c34`
New module: genrich (#877) * Add genrich module * Rearrange genrich module from genrich/genrich to genrich * Remove copy/paste code * Fix meta.yml * Implement save_duplicates independently of -r opt 2021-10-22 10:22:02 +00:00			`- path: output/genrich/test.intervals.bed`
Refactor genrich to avoid params in main (#981) * Refactor genrich to avoid params in main * Missed to commit test.yml file 2021-10-29 14:37:39 +00:00			`md5sum: 4bea65caa3f4043d703af4b57161112e`
New module: genrich (#877) * Add genrich module * Rearrange genrich module from genrich/genrich to genrich * Remove copy/paste code * Fix meta.yml * Implement save_duplicates independently of -r opt 2021-10-22 10:22:02 +00:00			`- path: output/genrich/test.narrowPeak`
Refactor genrich to avoid params in main (#981) * Refactor genrich to avoid params in main * Missed to commit test.yml file 2021-10-29 14:37:39 +00:00			`md5sum: d41d8cd98f00b204e9800998ecf8427e`
New module: genrich (#877) * Add genrich module * Rearrange genrich module from genrich/genrich to genrich * Remove copy/paste code * Fix meta.yml * Implement save_duplicates independently of -r opt 2021-10-22 10:22:02 +00:00			`- path: output/genrich/test.pileup.bedGraph`
Refactor genrich to avoid params in main (#981) * Refactor genrich to avoid params in main * Missed to commit test.yml file 2021-10-29 14:37:39 +00:00			`md5sum: 03e53848de695b5794f32f15b2709203`
New module: genrich (#877) * Add genrich module * Rearrange genrich module from genrich/genrich to genrich * Remove copy/paste code * Fix meta.yml * Implement save_duplicates independently of -r opt 2021-10-22 10:22:02 +00:00			`- path: output/genrich/test.pvalues.bedGraph`
Refactor genrich to avoid params in main (#981) * Refactor genrich to avoid params in main * Missed to commit test.yml file 2021-10-29 14:37:39 +00:00			`md5sum: b14feef34b6d2379a173a734ca963cde`

			`- name: genrich test_genrich_blacklist`
			`command: nextflow run tests/modules/genrich -entry test_genrich_blacklist -c tests/config/nextflow.config`
			`tags:`
			`- genrich`
			`files:`
			`- path: output/genrich/test.narrowPeak`
			`md5sum: 6afabdd3f691c7c84c66ff8a23984681`
New module: genrich (#877) * Add genrich module * Rearrange genrich module from genrich/genrich to genrich * Remove copy/paste code * Fix meta.yml * Implement save_duplicates independently of -r opt 2021-10-22 10:22:02 +00:00
			`- name: genrich test_genrich_atacseq`
			`command: nextflow run tests/modules/genrich -entry test_genrich_atacseq -c tests/config/nextflow.config`
			`tags:`
			`- genrich`
			`files:`
			`- path: output/genrich/test.narrowPeak`
			`md5sum: ddea556b820f8be3695ffdf6c6f70aff`