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nf-core_modules/tests/modules/hamronization/summarize/test.yml

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Add `hamronization/summarize` (#1366) * fix: remove left-over unnecessary code * Add hamronizer/deeparg * Add hamronisation/summarise * Update test.yml * Update modules/hamronization/summarize/meta.yml Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * line up outputs Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-03-03 07:02:04 +00:00
- name: hamronization summarize test_hamronization_summarize
Set process label to `process_single` for modules with no `task.cpus` usage (#2076) * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 09:54:47 +00:00
command: nextflow run ./tests/modules/hamronization/summarize -entry test_hamronization_summarize -c ./tests/config/nextflow.config -c ./tests/modules/hamronization/summarize/nextflow.config
Add `hamronization/summarize` (#1366) * fix: remove left-over unnecessary code * Add hamronizer/deeparg * Add hamronisation/summarise * Update test.yml * Update modules/hamronization/summarize/meta.yml Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * line up outputs Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-03-03 07:02:04 +00:00
tags:
Set process label to `process_single` for modules with no `task.cpus` usage (#2076) * Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
2022-09-19 09:54:47 +00:00
- hamronization
Add HAMRONIZATION/FARGENE and updates all HARMONIZATION tools to 1.1.1 (#2107) * Update main.nf * Update meta.yml * Re-add logos as not staged in a way that works with MultiQC config files * Update main.nf * Remove now unnecessary input channel * Remove unused channel from tests * Update hAMRonization to 1.1.1 and add hAMRonization farGene * Fix hamronizatio ntests * Prettier * Fix fargene linting * Correct file * Fix fargene output * Apply suggestions from code review Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * Fix summarise tests * Prettier Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-09-27 13:32:18 +00:00
- hamronization/summarize
Add `hamronization/summarize` (#1366) * fix: remove left-over unnecessary code * Add hamronizer/deeparg * Add hamronisation/summarise * Update test.yml * Update modules/hamronization/summarize/meta.yml Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * line up outputs Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-03-03 07:02:04 +00:00
files:
- path: output/hamronization/hamronization_combined_report.json
Add HAMRONIZATION/FARGENE and updates all HARMONIZATION tools to 1.1.1 (#2107) * Update main.nf * Update meta.yml * Re-add logos as not staged in a way that works with MultiQC config files * Update main.nf * Remove now unnecessary input channel * Remove unused channel from tests * Update hAMRonization to 1.1.1 and add hAMRonization farGene * Fix hamronizatio ntests * Prettier * Fix fargene linting * Correct file * Fix fargene output * Apply suggestions from code review Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * Fix summarise tests * Prettier Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-09-27 13:32:18 +00:00
md5sum: ab0c899664398193a25a699b92f960b9
Add `hamronization/summarize` (#1366) * fix: remove left-over unnecessary code * Add hamronizer/deeparg * Add hamronisation/summarise * Update test.yml * Update modules/hamronization/summarize/meta.yml Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * line up outputs Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-03-03 07:02:04 +00:00
- path: output/hamronization/test.tsv
Add HAMRONIZATION/FARGENE and updates all HARMONIZATION tools to 1.1.1 (#2107) * Update main.nf * Update meta.yml * Re-add logos as not staged in a way that works with MultiQC config files * Update main.nf * Remove now unnecessary input channel * Remove unused channel from tests * Update hAMRonization to 1.1.1 and add hAMRonization farGene * Fix hamronizatio ntests * Prettier * Fix fargene linting * Correct file * Fix fargene output * Apply suggestions from code review Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * Fix summarise tests * Prettier Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-09-27 13:32:18 +00:00
md5sum: e886d665bf9fc266be8193859863d2f4
Add `hamronization/summarize` (#1366) * fix: remove left-over unnecessary code * Add hamronizer/deeparg * Add hamronisation/summarise * Update test.yml * Update modules/hamronization/summarize/meta.yml Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * line up outputs Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com> Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-03-03 07:02:04 +00:00
- path: output/hamronization/test2.tsv
Add HAMRONIZATION/FARGENE and updates all HARMONIZATION tools to 1.1.1 (#2107) * Update main.nf * Update meta.yml * Re-add logos as not staged in a way that works with MultiQC config files * Update main.nf * Remove now unnecessary input channel * Remove unused channel from tests * Update hAMRonization to 1.1.1 and add hAMRonization farGene * Fix hamronizatio ntests * Prettier * Fix fargene linting * Correct file * Fix fargene output * Apply suggestions from code review Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com> * Fix summarise tests * Prettier Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-09-27 13:32:18 +00:00
md5sum: 2d94ecb8be8d9036877e47a81ae92a41
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