mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
41 lines
1.1 KiB
YAML
41 lines
1.1 KiB
YAML
|
name: mash_sketch
|
||
|
|
description: Creates vastly reduced representations of sequences using MinHash
|
||
|
|
keywords:
|
||
|
|
- mash/sketch
|
||
|
|
tools:
|
||
|
|
- mash:
|
||
|
|
description: Fast sequence distance estimator that uses MinHash
|
||
|
|
homepage: https://github.com/marbl/Mash
|
||
|
|
documentation: https://mash.readthedocs.io/en/latest/sketches.html
|
||
|
|
tool_dev_url: https://github.com/marbl/Mash
|
||
|
|
doi: "10.1186/s13059-016-0997-x"
|
||
|
|
licence: ['https://github.com/marbl/Mash/blob/master/LICENSE.txt']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- reads:
|
||
|
|
type: file
|
||
|
|
description: List of input paired-end FastQ files
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: Sketch output
|
||
|
|
pattern: "*.{mash}"
|
||
|
|
- stats:
|
||
|
|
type: file
|
||
|
|
description: Sketch statistics
|
||
|
|
pattern: "*.{mash_stats}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@thanhleviet"
|