mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
26 lines
655 B
Text
26 lines
655 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { PHANTOMPEAKQUALTOOLS } from '../../../modules/phantompeakqualtools/main.nf'
|
||
|
|
|
||
|
|
workflow test_phantompeakqualtools_single_end {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:true ], // meta map
|
||
|
|
file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
|
||
|
|
PHANTOMPEAKQUALTOOLS ( input )
|
||
|
|
}
|
||
|
|
|
||
|
|
workflow test_phantompeakqualtools_paired_end {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test', single_end:false ], // meta map
|
||
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
|
||
|
|
PHANTOMPEAKQUALTOOLS ( input )
|
||
|
|
}
|