2020-12-08 12:40:32 +00:00
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- name: Run bowtie index
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2020-12-08 12:59:14 +00:00
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command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_index -c tests/config/nextflow.config
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2020-12-08 12:40:32 +00:00
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tags:
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2020-12-08 12:59:14 +00:00
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- bowtie
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- bowtie_index
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2020-12-08 12:40:32 +00:00
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files:
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: bfd10c5319c6a0dbc540fd789254a5dd
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: cd201e81724f3099131aec16ef2cc53b
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: bbb9d6d21ad765d135f95290204e8433
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: 44f719c2fe42e1f35d54e798775846d1
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: f3c398bba5158f4039334a932d79c051
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2020-12-08 12:40:32 +00:00
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2020-12-08 12:59:14 +00:00
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- name: Run bowtie index and align signle-end
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command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_single_end -c tests/config/nextflow.config
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2020-12-08 12:40:32 +00:00
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tags:
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2020-12-08 12:59:14 +00:00
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- bowtie
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2020-12-08 13:19:34 +00:00
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- bowtie_align
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2020-12-08 12:40:32 +00:00
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files:
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: bfd10c5319c6a0dbc540fd789254a5dd
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: cd201e81724f3099131aec16ef2cc53b
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: bbb9d6d21ad765d135f95290204e8433
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: 44f719c2fe42e1f35d54e798775846d1
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2020-12-09 15:54:11 +00:00
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- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
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2020-12-08 12:59:14 +00:00
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md5sum: f3c398bba5158f4039334a932d79c051
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- path: output/bowtie/test.out
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md5sum: 6edce9d0d8ad7f5ce837a5be7e0d7fbe
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- path: output/bowtie/test.sam
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md5sum: acdb36ea915ac2ac71b69a0b704d9d8a
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2020-12-08 12:40:32 +00:00
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2020-12-09 15:54:11 +00:00
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- name: Run bowtie index and align paired_end
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command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_paired_end -c tests/config/nextflow.config
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tags:
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- bowtie
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- bowtie_align
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files:
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- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
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md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
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- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
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md5sum: bfd10c5319c6a0dbc540fd789254a5dd
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- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
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md5sum: cd201e81724f3099131aec16ef2cc53b
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- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
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md5sum: bbb9d6d21ad765d135f95290204e8433
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- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
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md5sum: 44f719c2fe42e1f35d54e798775846d1
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- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
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md5sum: f3c398bba5158f4039334a932d79c051
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- path: output/bowtie/test.out
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md5sum: 6edce9d0d8ad7f5ce837a5be7e0d7fbe
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- path: output/bowtie/test.sam
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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