2021-11-02 09:59:25 +00:00
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name: hmmcopy_gccounter
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description: gcCounter function from HMMcopy utilities, used to generate GC content in non-overlapping windows from a fasta reference
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keywords:
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- hmmcopy
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- gccounter
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- cnv
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tools:
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- hmmcopy:
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description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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homepage: https://github.com/shahcompbio/hmmcopy_utils
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documentation: https://github.com/shahcompbio/hmmcopy_utils
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tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils
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doi: ""
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2022-02-15 11:15:27 +00:00
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licence: ["GPL v3"]
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2021-11-02 09:59:25 +00:00
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input:
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- fasta:
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type: file
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description: Input genome fasta file
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- wig:
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type: file
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description: wig file containing gc content of each window of the genome
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pattern: "*.{gc.wig}"
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authors:
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- "@sppearce"
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