mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
18 lines
680 B
Text
18 lines
680 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { PICARD_LIFTOVERVCF } from '../../../../modules/picard/liftovervcf/main.nf'
|
||
|
|
|
||
|
|
workflow test_picard_liftovervcf {
|
||
|
|
|
||
|
|
input_vcf = [ [ id:'test' ],
|
||
|
|
file(params.test_data['homo_sapiens']['illumina']['test_genome_vcf'], checkIfExists: true)
|
||
|
|
]
|
||
|
|
dict = file(params.test_data['homo_sapiens']['genome']['genome_dict'], checkIfExists: true)
|
||
|
|
chain = file(params.test_data['homo_sapiens']['genome']['genome_chain_gz'], checkIfExists: true)
|
||
|
|
fasta = [ file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true) ]
|
||
|
|
|
||
|
|
PICARD_LIFTOVERVCF ( input_vcf, dict, chain, fasta )
|
||
|
|
}
|