nf-core_modules/modules/controlfreec/freec2circos/meta.yml

46 lines
1.1 KiB
YAML
Raw Normal View History

name: controlfreec_freec2circos
description: Format Freec output to circos input format
keywords:
- cna
- cnv
- somatic
- single
- tumor-only
tools:
- controlfreec:
description: Copy number and genotype annotation from whole genome and whole exome sequencing data.
homepage: http://boevalab.inf.ethz.ch/FREEC
documentation: http://boevalab.inf.ethz.ch/FREEC/tutorial.html
tool_dev_url: https://github.com/BoevaLab/FREEC/
doi: "10.1093/bioinformatics/btq635"
licence: ["GPL >=2"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- ratio:
type: file
description: ratio file generated by FREEC
pattern: "*.ratio.txt"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- circos:
type: file
description: Txt file
pattern: "*.circos.txt"
authors:
- "@FriederikeHanssen"