mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
18 lines
582 B
Text
18 lines
582 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { MOSDEPTH } from '../../../software/mosdepth/main.nf' addParams( options: [:] )
|
||
|
|
|
||
|
|
workflow test_mosdepth {
|
||
|
|
|
||
|
|
input = [ [ id:'test', single_end:true ],
|
||
|
|
[ file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam", checkIfExists: true) ],
|
||
|
|
[ file("${launchDir}/tests/data/bam/test.paired_end.sorted.bam.bai", checkIfExists: true) ] ]
|
||
|
|
dummy = [ file("${launchDir}/tests/data/dummy/dummy_file.txt", checkIfExists: true) ]
|
||
|
|
|
||
|
|
window_size = 100
|
||
|
|
|
||
|
|
MOSDEPTH ( input, dummy, window_size )
|
||
|
|
}
|