nf-core_modules/software/bedtools/intersect/main.nf

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2020-07-14 14:17:23 +00:00
process INTERSECT_BED {
tag "$input_file_1-$input_file_2"
container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0'
input:
path (input_file_1)
path (input_file_2)
val (intersectbed_args)
output:
stdout()
script:
"""
bedtools intersect -a ${input_file_1} -b ${input_file_2} ${intersectbed_args}
"""
}