nf-core_modules/tests/modules/samtools/fastq/test.yml

- name: samtools fastq test_samtools_fastq
  command: nextflow run tests/modules/samtools/fastq -entry test_samtools_fastq -c tests/config/nextflow.config
  tags:
    - samtools
    - samtools/fastq
  files:
    - path: output/samtools/test_2.fastq.gz
      md5sum: 3b1c92f33a44a78d82f8360ab4fdfd61
    - path: output/samtools/test_1.fastq.gz
      md5sum: 5a3f9c69a032c4ffd9071ea31a14e6f9
new module: samtools/fastq (#316) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem 2021-03-23 11:13:07 +00:00			`- name: samtools fastq test_samtools_fastq`
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml 2021-07-07 09:10:18 +00:00			`command: nextflow run tests/modules/samtools/fastq -entry test_samtools_fastq -c tests/config/nextflow.config`
new module: samtools/fastq (#316) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem 2021-03-23 11:13:07 +00:00			`tags:`
			`- samtools`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- samtools/fastq`
new module: samtools/fastq (#316) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem 2021-03-23 11:13:07 +00:00			`files:`
modified the samtools/fastq module (#339) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem * Module samtools/fastq: * output compressed fastq.gz file(s) * add if conditionals for single/paired reads * samtools/fastq: modified test.yml * samtools/fastq: modified main.nf to avoid duplicated part of the script section Co-authored-by: suzannejin <suzanne.jin@crg.eu> 2021-03-23 17:43:52 +00:00			`- path: output/samtools/test_2.fastq.gz`
nf-core modules bump-versions for all modules (#630) * Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests 2021-07-28 08:10:44 +00:00			`md5sum: 3b1c92f33a44a78d82f8360ab4fdfd61`
modified the samtools/fastq module (#339) * new module: samtools/fastq * solve conflict: pytest_software.yml * solve linting conflicts * solved EditorConfig linting problem * Module samtools/fastq: * output compressed fastq.gz file(s) * add if conditionals for single/paired reads * samtools/fastq: modified test.yml * samtools/fastq: modified main.nf to avoid duplicated part of the script section Co-authored-by: suzannejin <suzanne.jin@crg.eu> 2021-03-23 17:43:52 +00:00			`- path: output/samtools/test_1.fastq.gz`
nf-core modules bump-versions for all modules (#630) * Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests 2021-07-28 08:10:44 +00:00			`md5sum: 5a3f9c69a032c4ffd9071ea31a14e6f9`