nf-core_modules/modules/bedtools/getfasta/meta.yml

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name: bedtools_getfasta
description: extract sequences in a FASTA file based on intervals defined in a feature file.
keywords:
- bed
- fasta
- getfasta
tools:
- bedtools:
description: |
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html
licence: ['MIT']
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input:
- bed:
type: file
description: Bed feature file
pattern: "*.{bed}"
- fasta:
type: file
description: Input fasta file
pattern: "*.{fa,fasta}"
output:
- fasta:
type: file
description: Output fasta file with extracted sequences
pattern: "*.{fa}"
- versions:
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type: file
description: File containing software versions
pattern: "versions.yml"
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authors:
- "@joseespinosa"
- "@drpatelh"