2021-03-28 19:38:50 +00:00
|
|
|
name: fgbio_callmolecularconsensusreads
|
|
|
|
description: Calls consensus sequences from reads with the same unique molecular tag.
|
|
|
|
|
|
|
|
keywords:
|
|
|
|
- UMIs
|
|
|
|
- consensus sequence
|
|
|
|
- bam
|
|
|
|
- sam
|
|
|
|
tools:
|
|
|
|
- fgbio:
|
|
|
|
description: Tools for working with genomic and high throughput sequencing data.
|
|
|
|
homepage: https://github.com/fulcrumgenomics/fgbio
|
|
|
|
documentation: http://fulcrumgenomics.github.io/fgbio/
|
|
|
|
licence: ['MIT']
|
|
|
|
|
|
|
|
input:
|
|
|
|
- meta:
|
|
|
|
type: map
|
|
|
|
description: |
|
|
|
|
Groovy Map containing sample information
|
|
|
|
e.g. [ id:'test', single_end:false, collapse:false ]
|
|
|
|
- bam:
|
|
|
|
type: file
|
|
|
|
description: |
|
|
|
|
The input SAM or BAM file.
|
|
|
|
pattern: "*.{bam,sam}"
|
|
|
|
|
|
|
|
output:
|
|
|
|
- meta:
|
|
|
|
type: map
|
|
|
|
description: |
|
|
|
|
Groovy Map containing sample information
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
|
|
|
- bam:
|
|
|
|
type: file
|
|
|
|
description: |
|
|
|
|
Output SAM or BAM file to write consensus reads.
|
|
|
|
pattern: "*.{bam,sam}"
|
2021-10-03 07:20:26 +00:00
|
|
|
- versions:
|
2021-03-28 19:38:50 +00:00
|
|
|
type: file
|
2021-10-03 07:20:26 +00:00
|
|
|
description: File containing software versions
|
2021-09-27 08:41:24 +00:00
|
|
|
pattern: "versions.yml"
|
2021-03-28 19:38:50 +00:00
|
|
|
|
|
|
|
authors:
|
|
|
|
- "@sruthipsuresh"
|