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name : malt_build
description : MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics.
keywords :
- malt
- alignment
- metagenomics
- ancient DNA
- aDNA
- palaeogenomics
- archaeogenomics
- microbiome
- database
tools :
- malt :
description : A tool for mapping metagenomic data
homepage : https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/malt/
documentation : https://software-ab.informatik.uni-tuebingen.de/download/malt/manual.pdf
tool_dev_url : None
doi : "10.1038/s41559-017-0446-6"
licence : [ 'GPL v3' ]
input :
- fastas :
type : file
description : Directory of, or FASTA reference files for indexing
pattern : "*/|*.fasta"
- seq_type :
type : string
description : Type of input data
pattern : "DNA|Protein"
- gff :
type : file
description : Directory of, or GFF3 files of input FASTA files
pattern : "*/|*.gff|*.gff3"
- map_db :
type : file
description : MEGAN .db file from https://software-ab.informatik.uni-tuebingen.de/download/megan6/welcome.html
pattern :
output :
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- versions :
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type : file
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description : File containing software versions
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pattern : "versions.yml"
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- index :
type : directory
description : Directory containing MALT database index directory
pattern : "malt_index/"
- log :
type : file
description : Log file from STD out of malt-build
pattern : "malt-build.log"
authors :
- "@jfy133"