mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
43 lines
945 B
YAML
43 lines
945 B
YAML
|
name: mlst
|
||
|
|
description: Run Torsten Seemann's classic MLST on a genome assembly
|
||
|
|
keywords:
|
||
|
|
- mlst
|
||
|
|
tools:
|
||
|
|
- mlst:
|
||
|
|
description: Scan contig files against PubMLST typing schemes
|
||
|
|
homepage: None
|
||
|
|
documentation: None
|
||
|
|
tool_dev_url: None
|
||
|
|
doi: ""
|
||
|
|
licence: ['GPL v2']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- fasta:
|
||
|
|
type: file
|
||
|
|
description: Assembly fasta file
|
||
|
|
pattern: "*.{fasta,fa,fna}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- meta:
|
||
|
|
type: map
|
||
|
|
description: |
|
||
|
|
Groovy Map containing sample information
|
||
|
|
e.g. [ id:'test', single_end:false ]
|
||
|
|
- versions:
|
||
|
|
type: file
|
||
|
|
description: File containing software versions
|
||
|
|
pattern: "versions.yml"
|
||
|
|
- tsv:
|
||
|
|
type: file
|
||
|
|
description: MLST calls in tsv format
|
||
|
|
pattern: "*.{tsv}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@lskatz"
|
||
|
|
- "@tseemann"
|