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49 lines
1.3 KiB
YAML
49 lines
1.3 KiB
YAML
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name: mummer
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description: MUMmer is a system for rapidly aligning entire genomes
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keywords:
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- align
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- genome
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- fasta
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tools:
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- mummer:
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description: MUMmer is a system for rapidly aligning entire genomes
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homepage: http://mummer.sourceforge.net/
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documentation: http://mummer.sourceforge.net/
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tool_dev_url: http://mummer.sourceforge.net/
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doi: https://doi.org/10.1186/gb-2004-5-2-r12
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licence: ['The Artistic License']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- ref:
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type: file
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description: FASTA file of the reference sequence
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pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}"
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- query:
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type: file
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description: FASTA file of the query sequence
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pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- coords:
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type: file
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description: File containing coordinates of matches between reference and query sequence
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pattern: "*.coords"
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authors:
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- "@mjcipriano"
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- "@sateeshperi"
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