nf-core_modules/modules/picard/mergesamfiles/meta.yml

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name: picard_mergesamfiles
description: Merges multiple BAM files into a single file
keywords:
- merge
- alignment
- bam
- sam
tools:
- picard:
description: |
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS)
data and formats such as SAM/BAM/CRAM and VCF.
homepage: https://broadinstitute.github.io/picard/
documentation: https://broadinstitute.github.io/picard/
licence: ['MIT']
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input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: List of BAM files
pattern: "*.{bam}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: Merged BAM file
pattern: "*.{bam}"
- versions:
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type: file
description: File containing software versions
pattern: "versions.yml"
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authors:
- "@drpatelh"